日本生物多様性情報 イニシアチブ

Japan Initiative for Biodiversity Information

TreeBASE is a repository of phylogenetic information, specifically user-submitted phylogenetic trees and the data used to generate them. TreeBASE accepts all kinds of phylogenetic data (e.g., trees of species, trees of populations, trees of genes) representing all biotic taxa.

キーワード:
生物種の遺伝的性質 系統樹生物種遺伝子

phyloXML is an XML language designed to describe phylogenetic trees (or networks) and associated data. PhyloXML provides elements for commonly used features, such as taxonomic information, gene names and identifiers, branch lengths, support values, and gene duplication and speciation events. Using these standardized elements allows interoperability between various applications and databases.

キーワード:
生物多様性調査 XMLゲノミクス生物系統地理学系統発生学進化系統樹

NeXML is an exchange standard for representing phyloinformatic data -- inspired by the commonly used NEXUS format, but more robust and easier to process.

キーワード:
生物多様性調査 XML系統発生学系統樹